CDS

Accession Number TCMCG007C06019
gbkey CDS
Protein Id XP_009133519.1
Location join(5886515..5887423,5887517..5887668,5887749..5889662,5889750..5890125,5890215..5890362,5890427..5890520,5890611..5890728)
Gene LOC103858000
GeneID 103858000
Organism Brassica rapa

Protein

Length 1236aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009135271.3
Definition transcriptional regulator ATRX isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category O
Description protein binding, zinc ion binding
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K01931        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000209        [VIEW IN EMBL-EBI]
GO:0001654        [VIEW IN EMBL-EBI]
GO:0001709        [VIEW IN EMBL-EBI]
GO:0002009        [VIEW IN EMBL-EBI]
GO:0002064        [VIEW IN EMBL-EBI]
GO:0002065        [VIEW IN EMBL-EBI]
GO:0002066        [VIEW IN EMBL-EBI]
GO:0002165        [VIEW IN EMBL-EBI]
GO:0002682        [VIEW IN EMBL-EBI]
GO:0002683        [VIEW IN EMBL-EBI]
GO:0003002        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003008        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005543        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007276        [VIEW IN EMBL-EBI]
GO:0007281        [VIEW IN EMBL-EBI]
GO:0007292        [VIEW IN EMBL-EBI]
GO:0007389        [VIEW IN EMBL-EBI]
GO:0007398        [VIEW IN EMBL-EBI]
GO:0007399        [VIEW IN EMBL-EBI]
GO:0007422        [VIEW IN EMBL-EBI]
GO:0007423        [VIEW IN EMBL-EBI]
GO:0007444        [VIEW IN EMBL-EBI]
GO:0007472        [VIEW IN EMBL-EBI]
GO:0007476        [VIEW IN EMBL-EBI]
GO:0007498        [VIEW IN EMBL-EBI]
GO:0007552        [VIEW IN EMBL-EBI]
GO:0007560        [VIEW IN EMBL-EBI]
GO:0007610        [VIEW IN EMBL-EBI]
GO:0007611        [VIEW IN EMBL-EBI]
GO:0007613        [VIEW IN EMBL-EBI]
GO:0007616        [VIEW IN EMBL-EBI]
GO:0008052        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008270        [VIEW IN EMBL-EBI]
GO:0008289        [VIEW IN EMBL-EBI]
GO:0008356        [VIEW IN EMBL-EBI]
GO:0008593        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009886        [VIEW IN EMBL-EBI]
GO:0009887        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009967        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010160        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010647        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016360        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0019953        [VIEW IN EMBL-EBI]
GO:0022008        [VIEW IN EMBL-EBI]
GO:0022412        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022603        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0023056        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0030707        [VIEW IN EMBL-EBI]
GO:0030718        [VIEW IN EMBL-EBI]
GO:0030855        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032504        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0035091        [VIEW IN EMBL-EBI]
GO:0035107        [VIEW IN EMBL-EBI]
GO:0035114        [VIEW IN EMBL-EBI]
GO:0035120        [VIEW IN EMBL-EBI]
GO:0035203        [VIEW IN EMBL-EBI]
GO:0035204        [VIEW IN EMBL-EBI]
GO:0035220        [VIEW IN EMBL-EBI]
GO:0035239        [VIEW IN EMBL-EBI]
GO:0035295        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042478        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043169        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044703        [VIEW IN EMBL-EBI]
GO:0045165        [VIEW IN EMBL-EBI]
GO:0045314        [VIEW IN EMBL-EBI]
GO:0045595        [VIEW IN EMBL-EBI]
GO:0045596        [VIEW IN EMBL-EBI]
GO:0045610        [VIEW IN EMBL-EBI]
GO:0045611        [VIEW IN EMBL-EBI]
GO:0045613        [VIEW IN EMBL-EBI]
GO:0045614        [VIEW IN EMBL-EBI]
GO:0045664        [VIEW IN EMBL-EBI]
GO:0045747        [VIEW IN EMBL-EBI]
GO:0046532        [VIEW IN EMBL-EBI]
GO:0046872        [VIEW IN EMBL-EBI]
GO:0046914        [VIEW IN EMBL-EBI]
GO:0048468        [VIEW IN EMBL-EBI]
GO:0048471        [VIEW IN EMBL-EBI]
GO:0048477        [VIEW IN EMBL-EBI]
GO:0048513        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048563        [VIEW IN EMBL-EBI]
GO:0048569        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048581        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0048609        [VIEW IN EMBL-EBI]
GO:0048645        [VIEW IN EMBL-EBI]
GO:0048646        [VIEW IN EMBL-EBI]
GO:0048699        [VIEW IN EMBL-EBI]
GO:0048707        [VIEW IN EMBL-EBI]
GO:0048729        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048736        [VIEW IN EMBL-EBI]
GO:0048737        [VIEW IN EMBL-EBI]
GO:0048749        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048859        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050767        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050877        [VIEW IN EMBL-EBI]
GO:0050890        [VIEW IN EMBL-EBI]
GO:0051093        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051241        [VIEW IN EMBL-EBI]
GO:0051259        [VIEW IN EMBL-EBI]
GO:0051260        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051960        [VIEW IN EMBL-EBI]
GO:0060284        [VIEW IN EMBL-EBI]
GO:0060429        [VIEW IN EMBL-EBI]
GO:0060562        [VIEW IN EMBL-EBI]
GO:0060581        [VIEW IN EMBL-EBI]
GO:0060582        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901981        [VIEW IN EMBL-EBI]
GO:1903706        [VIEW IN EMBL-EBI]
GO:1903707        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000027        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATGACATCTGACGTAGAAACGTCTCAGGCTTTTAATTACGTATTAAGCCCCCACGAGAGATGCATCCGAGGAGACAACAACAACAATAAGAAGACCAAGAACAACAACAGCAACAACAACAATGTCCGAAACATACACGTCGCCTTCGAGAAGAATCTCAATGTTTTTGTCAGAGATCATCTCGATAACGTTACCGTTGCCTCCGGTGAGAATGGTGATGAATCCACCAAAGCGGTTCCTGAATGTTCTTCCAACAAATCCTCTGTTTTGAAAACAGAGGAACCTCGGTTATCATCGTCCTCTATAGGATCCGACCCGGATCCGAATTTACCTCATCCGGGTCAACAAGATAAGAACACGTCAAGGAAAGAAACCATGCCGGCTTCTTCTCTGGTTCAGATATGGGAGGCAAGGACAACGAGCTCGAACCAAAACCAAACACAAACCGATAGCAGAACGAGTTCTTCAGGATCAAACGTGTTAGAGAACTCAGAGTCTCTTATTGAGGAACCAGTCAAAGAATATGAACCAATACAGCCAGTTCAAGAAGGAAAAAATGAAGAACATAAAGAGGAAGAGATTGAATCTGACTCACAATCTGTTTCTGGTGAGAAGGAAAGAGAAGGCGTAAGAGTTATGGATATAATCAGGAAACTAAGCAGCGACACGGAAACAACAACGGGTAATAACGACAATGGAAGCAGCAGTAACGAGAACGGCAAAGAAGTTCAGACAACAACAACAGAAACAAGAACTTTTCCTCAGGTTTCTTGTTCCCCAAGAATAAGAGGGAGACAAGCATTTGCTGATTTATTGATTCAGATGATGCGTGATCGTGAAAAGGAGCTGGCTAGTTTGTTAGATCGCCATTGTGTTTCAAAGTTCACGCACCGGGGAAGGATTCAGTCGACGCTTAGGATTCGGTGTTACGAAAGGTGCATTGCGATTCAAGATAAGTATCGGTCTAAGTCATGGGCACCAGGATCTGATTTAAACCGGGCAGGAGGATCTGATTTAAACCGGTCACCACGAGGGTCTGGTGTGATGCATCTTCTCAAGGAGAAAAATAAGACAAATTCTGATAACATTTCTAGTTCTGTCTCTTCTCGGTCTAGGGTGATGGAGAAAGATCCTCAGAAGTCTTTGGAGAAGAAAGCTGTGGAGGAAATAATGGAGAAGATTGATGTCAAGGAGGTTCGAGAAGTGGTTTCTGCGGTGGAAACCGCGAAGAAAGCTGTCCTGAGTGAACTTGTAGAGAACAAGAATGGTTCAAAGAAATCCACTGGAGAAACTATTAAGAAGGAAAGTGCAGAAAGGAAAGGCGAAAAGCGAGAAACAATGGCTCAAGAAGTGGTTTCTGCTGTGGAAACCGCAAAGAAAGCTGTCTTGAGTGAAATTGTAGAAAACAAGAATGGTTTAAAGAAACCAACAGGAGAAACTATTAAAAAGGAAGTTGCAGAAAGGAGAGGCGAAAAGCGCGAAACAATGGAGAAACCTGTTGCTAAAGAAGGTCTTGAAAGGAGAGGCGAAAAGCGAGAAACAATGGAGAAACCTGTTGCTAGAGAAGGTCATAAAGGGAGAGGCGATAAGGAGACGGTCAAGAAAGCTGTTTTGAGTGAAAGTGCAGAGGGTAAGAGTGGTTTAAAGAAACCTATAGGGGAAACCCTTCAGAAAGAAACTACAGAAGGGAGAGGAGATAAAGGAGAAACAAAGGAGAAAGCTATTGCTAAAGAAAATGTGCAAGGGAATGTTTTGGTTGGAATAGCTGAGAAGGTGAACCGATGGAACTCAGAGGAGAAACTGAATAGGAGTAGATGGACAGAGAAAGGTAAAACTGAGACCAAAGCTAATACTGAGAGAGTTGATAAAAATGATGTATTAGAAGATGCTAAAAGAACCAATAATGTCCAAAGTGGGGAAAAAAGCAATACTACTTGTGAGTTTCCTGAGAAAGAAGTAAGAAGAAAGGAAAAGGAAGATTGTGTTTCTGTAGAAACTAAGTCCATAGAGATTGGAGATCCTCAACAAGGGACTGCACAAGAAGAGGAAAAGGTTGTCCAGGAGACAACAACCAGAAACAATAAAAATGGTTTAAAGAAACCTACTGAGAAGGAAAGTAAAGAAGGGAGAGAAATGGAGGAAAGTGTAGAAGGAAACACATTTATGGGAATAGCTGAGAAGGTGAAAATGTGGAACTCCAAGTACAAAAAGAGTAGGAGAAGATATTCTATGGACAGAGGTAAAGGCAAAACAGGCAAACCTAATACCGAGAGAAATGAAGTGTTGCAAGAAGCTTCAAGGAGAATCATTAATCTCAAAACTGAGGAGAGAAGTATTACTACTTCAAAGGAGAAAGTTGTTGGTACACAAGAGATTAAGGATAAAAGAGAGAGTAGTAGAGAAATAATGCAGTGTGAACCTGAAGAGAAAGGAAGAAGAATGAAAGAGGAAGAGCTTTGTTCTGAAGAAGCCAAGTCCAAAGATATCACTGAGGTGAAAATCATGAGTTCTCAAGAAGTTATTATACCAGCAAAAGAATCTGCATGTCATGGCTCTCCAGAGAGAGGTAAAGAGCTAAGTGCTTCACTACAAGGTGAAGAAATGTTTATTCTGCAAAACCTAGAAGACAAGTCTACTAAAGAGACTGATGGAAACAATTTTCAAGAAAATATAATTGAAGAAGACTCTAGAGAGAAGGCTAAAGAGAAGAATGCTTCACAACAGGATGAAGAGGTGAAAGAAGTAGCAATAGAGTTTGCAAATGATTGGGATGAAAAAGAAGATGATGATGATGATGATGATGACTATGAAGATTATGGAGATTTTGATGATTACATTGGAGAAATCTCAACTGATTGGATCTACGATGTGTCGAGGCCTCGAAGTTACTGGGAAGAGTTAAGGAAAGAAAGGTACCTTGAGGTTCTCAACACTGAATCTGATAAAAAGGACATATGTAACCTTATCCAGAGCCGAACAGTTTCCAACTTCTTGACGAGTGACTTGCGACAAAAAATCGATAATTTGATGACAAGTCTCGTGCAGAATCACCTAGGCGTACCAATCAATCAAGAAGAAGACGAAGAAGAAGAAAAAGAAGAGTGGGTTGAAGAGTGCTCAGCAAGGAACCAAGAATATAATGAAACAGAGGAAGAACCAGAGAAGACAAATCTTGAAGCTGCAAGCGACACAATTCTTGAAGCTGATCATGACGCTTGCAGCCAATCATCAGAAAGGAGTAGCACGTTGATGATTTCGTGGAGTTTCAGGGATCAAGATATCGACAAGGATAACGAACCCACAGCGTCTTTATCTCTCCCTGAGCCTTCTTCTGCCACAAGTCAAACTACACAGGAAATGCAGATGATAAGTGATCTCAGGGAACAAATGGAGCAGCTTCAACGAGAAATGCTAGAACTGCGAAACACTGTTAAATCTTGCACTGATATGCAACTTCATTTCCAGAAATCTTCAACTCAAGATTCTTGTCGCTCTGGCTCCTCTGCGGAACAAGGAGTAGAAACTAAGAATCCGTTAAAACGCAAGTGTTGCGTTTGCTCTGAGATGCCTGTTGAGTCACTTCTGTATAGGTGTGGACATATGTGCACGTGTCTAAAATGTGCTCATGAGTTGCAATGGAGCAGTAAGAAATGTCCGATTTGCATGGCTCCAATCGTCGATGTTGTGAGAGCTTTTCTTGATGCTTAG
Protein:  
MMTSDVETSQAFNYVLSPHERCIRGDNNNNKKTKNNNSNNNNVRNIHVAFEKNLNVFVRDHLDNVTVASGENGDESTKAVPECSSNKSSVLKTEEPRLSSSSIGSDPDPNLPHPGQQDKNTSRKETMPASSLVQIWEARTTSSNQNQTQTDSRTSSSGSNVLENSESLIEEPVKEYEPIQPVQEGKNEEHKEEEIESDSQSVSGEKEREGVRVMDIIRKLSSDTETTTGNNDNGSSSNENGKEVQTTTTETRTFPQVSCSPRIRGRQAFADLLIQMMRDREKELASLLDRHCVSKFTHRGRIQSTLRIRCYERCIAIQDKYRSKSWAPGSDLNRAGGSDLNRSPRGSGVMHLLKEKNKTNSDNISSSVSSRSRVMEKDPQKSLEKKAVEEIMEKIDVKEVREVVSAVETAKKAVLSELVENKNGSKKSTGETIKKESAERKGEKRETMAQEVVSAVETAKKAVLSEIVENKNGLKKPTGETIKKEVAERRGEKRETMEKPVAKEGLERRGEKRETMEKPVAREGHKGRGDKETVKKAVLSESAEGKSGLKKPIGETLQKETTEGRGDKGETKEKAIAKENVQGNVLVGIAEKVNRWNSEEKLNRSRWTEKGKTETKANTERVDKNDVLEDAKRTNNVQSGEKSNTTCEFPEKEVRRKEKEDCVSVETKSIEIGDPQQGTAQEEEKVVQETTTRNNKNGLKKPTEKESKEGREMEESVEGNTFMGIAEKVKMWNSKYKKSRRRYSMDRGKGKTGKPNTERNEVLQEASRRIINLKTEERSITTSKEKVVGTQEIKDKRESSREIMQCEPEEKGRRMKEEELCSEEAKSKDITEVKIMSSQEVIIPAKESACHGSPERGKELSASLQGEEMFILQNLEDKSTKETDGNNFQENIIEEDSREKAKEKNASQQDEEVKEVAIEFANDWDEKEDDDDDDDDYEDYGDFDDYIGEISTDWIYDVSRPRSYWEELRKERYLEVLNTESDKKDICNLIQSRTVSNFLTSDLRQKIDNLMTSLVQNHLGVPINQEEDEEEEKEEWVEECSARNQEYNETEEEPEKTNLEAASDTILEADHDACSQSSERSSTLMISWSFRDQDIDKDNEPTASLSLPEPSSATSQTTQEMQMISDLREQMEQLQREMLELRNTVKSCTDMQLHFQKSSTQDSCRSGSSAEQGVETKNPLKRKCCVCSEMPVESLLYRCGHMCTCLKCAHELQWSSKKCPICMAPIVDVVRAFLDA